Journal of Natural Science, Biology and Medicine

ORIGINAL ARTICLE
Year
: 2018  |  Volume : 9  |  Issue : 2  |  Page : 193--196

Detection and genetic characterization of Giardia intestinalis in children with gastrointestinal symptoms by PCR RFLP in Sikkim, India


Nongmaithem Onila Chanu1, T Shantikumar Singh1, Sudip Dutta2 
1 Department of Microbiology, Sikkim Manipal Institute of Medical Sciences, Gangtok, Sikkim, India
2 Department of Paediatrics, Sikkim Manipal Institute of Medical Sciences, Gangtok, Sikkim, India

Correspondence Address:
Nongmaithem Onila Chanu
Department of Microbiology, Sikkim Manipal Institute of Medical Sciences, Tadong, Gangtok, Sikkim
India

Background: This study is aimed to detect Giardia and genetically characterize Giardia intestinalis among children in Sikkim, India. Materials and Methods: A total of 400 stool samples were collected from the children (<15 years) with gastrointestinal symptoms, who attended Central Referral Hospital and Sir Thodup Namgyal Memorial Hospital. Giardia cysts were detected by microscopy from the stool samples and were genetically characterized by polymerase chain reaction–restriction fragment length polymorphism (PCR-RFLP) targeting glutamate dehydrogenase gene (gdh). Results: Giardia cysts were detected in 20/400 (5% incidence rate). Out of 20 samples, 13 (65%) were successfully assayed by PCR-RFLP. The PCR product of gdh gene was digested by BsPL1 and RsaI and isolated 53.7% of BIV, 38.5% of AII and B mixed, and 7.8% of BIII assemblages. There was no AI assemblage found in this study. Diarrhea and abdominal pain were the common complaints associated with giardiasis. Conclusions: PCR-RFLP targeting gdh gene locus is a reliable, easy, and cost-effective method to identify G. intestinalis and its assemblages. This is the first report on the prevalence and genetic variability of human giardiasis in symptomatic children in Sikkim, India.


How to cite this article:
Chanu NO, Singh T S, Dutta S. Detection and genetic characterization of Giardia intestinalis in children with gastrointestinal symptoms by PCR RFLP in Sikkim, India.J Nat Sc Biol Med 2018;9:193-196


How to cite this URL:
Chanu NO, Singh T S, Dutta S. Detection and genetic characterization of Giardia intestinalis in children with gastrointestinal symptoms by PCR RFLP in Sikkim, India. J Nat Sc Biol Med [serial online] 2018 [cited 2020 Oct 27 ];9:193-196
Available from: http://www.jnsbm.org/article.asp?issn=0976-9668;year=2018;volume=9;issue=2;spage=193;epage=196;aulast=Chanu;type=0