Journal of Natural Science, Biology and Medicine

ORIGINAL ARTICLE
Year
: 2014  |  Volume : 5  |  Issue : 1  |  Page : 36--42

Elucidating the specificity of non-heparin-based conformational activators of antithrombin for factor Xa inhibition


Qudsia Rashid1, Mohammad Abid2, Mohamad Aman Jairajpuri1 
1 Department of Bio Sciences, Protein Conformation and Enzymology Lab, New Delhi, India
2 Department of Organic Synthesis Lab, Jamia Millia Islamia, New Delhi, India

Correspondence Address:
Mohamad Aman Jairajpuri
Department of Bio-Sciences, Protein Conformation and Enzymology Lab, Jamia Millia Islamia (A Central University), Jamia Nagar, New Delhi - 110 025
India

Introduction: Antithrombin, the principal inhibitor of coagulation proteases, requires allosteric activation by its physiological cofactor, heparin or heparin sulfate to achieve physiologically permissible rates. This forms the basis of heparin«SQ»s use as a clinical anticoagulant. However, heparin therapy is beset with severe complications, giving rise to the need to search new non-heparin activators of antithrombin, devoid of these complications and with favorable safety profiles. Materials and Methods: We chose some representative organic compounds that have been shown to be involved in coagulation modulation by affecting antithrombin and applied a blind docking protocol to find the binding energy and interactions of the modified (sulfated) versus unmodified organic scaffolds. Results and Conclusion: Increased sulfation plays a key role in shifting the specificity of organic compounds like quercetin, diosmin, rutin, mangiferin, isomangostin, Trapezifolixanthone and benzofuran towards the heparin binding site (HBS). However, in hesperetin and tetrahydroisoquinoline, sulfation shifts the specificity away from HBS. We have further tried to elucidate changes in the binding affinity of quercetin on account of gradual increase in the number of hydroxyl groups being substituted by sulfate groups. The results show gradual increase in binding energy with increase in sulfation. A theoretical screening approach is an ideal mechanism to predict lead molecules as activators of antithrombin and in determining the specificity for antithrombin.


How to cite this article:
Rashid Q, Abid M, Jairajpuri MA. Elucidating the specificity of non-heparin-based conformational activators of antithrombin for factor Xa inhibition.J Nat Sc Biol Med 2014;5:36-42


How to cite this URL:
Rashid Q, Abid M, Jairajpuri MA. Elucidating the specificity of non-heparin-based conformational activators of antithrombin for factor Xa inhibition. J Nat Sc Biol Med [serial online] 2014 [cited 2021 Apr 13 ];5:36-42
Available from: http://www.jnsbm.org/article.asp?issn=0976-9668;year=2014;volume=5;issue=1;spage=36;epage=42;aulast=Rashid;type=0